Evergence Series by Sean Williams, Shane Dix

Commander Morgan Roche of the Commonwealth of Empires is assigned to escort the artificial intelligence unit known as "The Box" to her superiors. With the help of Adoni Cane -- a genetically enhanced warrior who suffers from amnesia -- Roche must protect "The Box" at all costs. But what about Cane? Who created him and why? The answers may be the salvation of the human race -- or its damnation...

Morgan Roche had been an intelligence agent for the Commonwealth of Empires. But she turned renegade to determine the truth about the man named Adoni Cane. the Answer - that he was the last of the genetically enhanced warriors called the Sol Wunderkind - shook the foundations of her world. Now Roche is faced with an even more frightening fact - Cane may not be the last of his kind. A planet has vanished, leaving only a terrible emptiness in space... moreMorgan Roche had been an intelligence agent for the Commonwealth of Empires. But she turned renegade to determine the truth about the man named Adoni Cane. the Answer - that he was the last of the genetically enhanced warriors called the Sol Wunderkind - shook the foundations of her world. Now Roche is faced with an even more frightening fact - Cane may not be the last of his kind. A planet has vanished, leaving only a terrible emptiness in space. Word spreads across the galaxy: the Sol Wunderkind have returned.Roche finds herself at the centre of the coming conflict, as she struggles to penetrate the layers of deception surrounding the origins of the super-soldiers - and the even deeper mystery concerning the Artificial Intelligence called Өe Boxߜ'97 an entity that seems to have a sinister agenda of its own. less

In a universe where Earth no longer exists, the remnants of humanity survive in space stations and starships. Now, an army of genetically enhanced warriors is sent to destroy mankind -- once and for all.Only one woman can stop them: renegade intelligence agent Morgan Roche.